JCI Insight - Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression
Single-cell trajectory analysis
Frontiers | LISA2: Learning Complex Single-Cell Trajectory and Expression Trends
Pathologic evolution-related Gene Analysis based on both single-cell and bulk transcriptomics in Colorectal Cancer
Pseudotime Estimation – Deconfounding Single Cell Time Series | RNA-Seq Blog
Current best practices in single‐cell RNA‐seq analysis: a tutorial | Molecular Systems Biology
Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing - ScienceDirect
Uncovering pseudotemporal trajectories with covariates from single cell and bulk expression data | Nature Communications
A guide to trajectory inference and RNA velocity | bioRxiv
PhenoPath pseudotime analysis of single-cell RNA-sequencing data under... | Download Scientific Diagram
15 Pseudotime Cell Trajectories | ANALYSIS OF SINGLE CELL RNA-SEQ DATA
Tutorials — Scanpy 1.9.1 documentation
The single cell pseudotime estimation problem. (A) Single cells at... | Download Scientific Diagram
Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut: Cell Systems
Single-cell RNA-Seq Trajectory Analysis Review - BioTuring's Blog
Pseudotime analysis in 5-plex time-course experiment. (A) Monocle... | Download Scientific Diagram
Trajectory-based differential expression analysis for single-cell sequencing data | Nature Communications
single cell - How to find differential expressed genes within pseudotime trajectory with Seurat cluster? - Bioinformatics Stack Exchange
Monocle
Generalized and scalable trajectory inference in single-cell omics data with VIA | Nature Communications
Single-cell transcriptome analysis reveals TOX as a promoting factor for T cell exhaustion and a predictor for anti-PD-1 responses in human cancer | Genome Medicine | Full Text
Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing | bioRxiv
pseudotime | RNA-Seq Blog
Monocle
PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data | bioRxiv
